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COTI Lab Publications

Journal Articles

  1. Meaney PM, Paulsen KD, Fanning MW, Li D, Fang Q, “Image accuracy improvements in microwave tomographic thermometry: phantom experience”, International Journal of Hyperthermia, vol. 19, pp. 534-550, 2003.
  2. Meaney PM, Fanning MW, Paulsen KD, Li D, Pendergrass SA, Fang Q, Moodie KL, “Microwave thermal imaging: Initial in vivo experience with a single heating zone”, International Journal of Hyperthermia, vol. 19, pp. 617-641, 2003.
  3. Fang Q, Meaney PM, Geimer SD, Streltsov AV, Paulsen KD, “Microwave image reconstruction from 3D fields coupled to 2D parameter estimation,” IEEE Transactions on Medical Imaging, vol. 23, pp. 475-484, Apr. 2004.
  4. Fang Q, Meaney PM, Paulsen KD, “Microwave image reconstruction of tissue property dispersion characteristics utilizing multiple frequency information”, IEEE Transactions on Microwave Theory and Techniques, vol. 52, No. 8, pp. 1866-1875, Aug. 2004.
  5. Fang Q, Meaney PM, Paulsen KD, “Singular value analysis of the Jacobian matrix in microwave image reconstruction,” IEEE Transactions on Antenna and Propagation, vol. 54, No. 8, pp.2371-2380, Aug. 2006.
  6. Fang Q, Meaney PM, Paulsen KD, “The multi-dimensional phase unwrapping integral and applications to microwave tomographical image reconstruction,” IEEE Transaction on Image Processing, vol 15, No. 11, pp. 3311-3324, Nov. 2006.
  7. Carp SA, Kauffman T, Fang Q, Rafferty E, Moore R, Kopans D, Boas D, “Compression-induced changes in the physiological state of the breast as observed through frequency domain photon migration measurements,” Journal of Biomedical Optics, vol. 11, issue 6, Nov./Dec. 2006.
  8. Meaney PM, Fang Q, Rubaek T, Paulsen KD, “Log transformation benefits parameter estimation in microwave tomographic imaging,” Medical Physics, 34 (6):2014-23, Jun 2007
  9. Meaney PM, Fanning MW, Raynolds T, Fox CJ, Fang Q, Kogel CA, Poplack SP, Paulsen KD, "Initial Clinical Experience with Microwave Breast Imaging in Women with Normal Mammography," Acad Radiol., vol. 14, pp. 207-218, 2007.
  10. Boverman G, Fang Q, Carp SA, Miller EL, Brooks DH, Selb J, Moore RH, Kopans DB, Boas DA, "Spatio-Temporal Imaging of the Hemoglobin in the Compressed Breast With Diffuse Optical Tomography," Phys. Med. Biol. 52 3619-3641, 2007.
  11. Boverman G, Miller EL,Brooks DH, Fang Q, Boas DA, "Estimation and Statistical Bounds for Three-Dimensional Polar Shapes in Diffuse Optical Tomography," IEEE Transactions on Medical Imaging, vol. 27, issue 6, pp.752 – 765, Jun 2008.
  12. Carp SA, Selb J, Fang Q. Moore R, Kopans DB, Rafferty E, Boas DA, “Dynamic functional and mechanical response of breast tissue to compression,” Optical Express, vol. 16, Issue 20, pp. 16064-16078, 2008.
  13. Fang Q, Sakadžić S, Ruvinskaya L, Devor A, Dale AM, Boas DA,"Oxygen advection and diffusion in a three dimensional vascular anatomical network," Optical Express, featured article, vol. 16, Issue 22, pp. 17530-17541, 2008.
  14. Fang Q, Carp SA, Selb J, Boverman G, Zhang Q, Kopans DB, Moore RH, Brooks DH, Miller EL, Boas DA, “Combined optical Imaging and mammography of the healthy breast: optical contrast derives from breast structure and compression,” IEEE Trans. Medical Imaging, vol. 28, issue 1, pp. 30 – 42, Jan. 2009.
  15. Zhu G, Popovic M, Fang Q, “Microwave-induced thermoacoustics: assisting microwave tomography,” IEEE Trans. on Magnetics, vol. 45, issue 3, pp. 1654-1657, 2009.
  16. Fang Q and Boas D, “Monte Carlo simulation of photon migration in 3D turbid media accelerated by graphics processing units,” Optics Express, featured article, vol. 17, issue 22, pp. 20178-20190, 2009.
  17. Fang Q, Meaney PM, Paulsen KD, “Viable three-dimensional microwave imaging, theory and experiments,” IEEE Trans. on Antennas and Propagation, vol. 58, No. 2, pp. 449– 458, 2010.
  18. Fang Q, Moore RH, Kopans DB, Boas DA, “Compositional-prior-guided image reconstruction algorithm for multi-modality imaging,” Biomedical Optics Express, vol. 1, issue 1, pp. 223-235, 2010.
  19. Fang Q, “Mesh-based Monte Carlo method using fast ray-tracing in Plücker coordinates,” Biomedical Optics Express, vol. 1, issue 1, pp. 165-175, 2010.
  20. Fang Q, Selb J, Carp SA, Kopans DB, Moore RH, Brooks DH, Miller EL, Boas DA, “Combined optical and tomosynthesis breast imaging,” Radiology, (cover article) vol. 258, No. 1, pp. 89-97, 2011.
  21. Fang Q, “Comment on ‘A study on tetrahedron-based inhomogeneous Monte-Carlo optical simulation’,” Biomed. Opt. Express, vol. 2, issue 5, pp. 1258-1264, 2011.
  22. Baraghis E, Devor A, Fang Q, Srinivasan VJ, Wu W, Boas D and Sakadžić S, "Two-photon microscopy of cortical NADH fluorescence intensity changes: correcting contamination from the hemodynamic response," J Biomed Opt 16, 106003 2011.
  23. Perdue KL, Fang Q, Diamond, SG, “Quantitative assessment of diffuse optical tomography sensitivity to the cerebral cortex using a whole-head probe”, Phys. Med. Biol. 57, 2857-2872, 2012.
  24. Cooper RJ, Caffini M, Dubb J, Fang Q, Custo A, Tsuzuki D, Fischl B, Wells W 3rd, Dan I, Boas DA, "Validating atlas-guided DOT: A comparison of diffuse optical tomography informed by atlas and subject-specific anatomies," NeuroImage. 62(3), 1999-2006, 2012
  25. Chen J, Fang Q, Intes X, "Mesh-based Monte Carlo method in time-domain widefield fluorescence molecular tomography," Journal of Biomedical Optics, 17(10), 106009 2012
  26. Fang Q and Kaeli D, "Accelerating mesh-based Monte Carlo method on modern CPU architectures," Biomed. Opt. Express, 3(12), 3223-3230, 2012
  27. Carp SA, Sajjadi1 AY, Wanyo CM, Fang Q, Specht M, Schapira L, Moy B, Bardia A, Boas DA, Isakoff SJ, “Hemodynamic signature of breast cancer under fractional mammographic compression using a dynamic diffuse optical tomography system,” Biomed. Opt. Express, 4(12) 2911-2924, 2013
  28. Selb J, Ogden TM, Dubb J, Fang Q, and Boas DA, “Comparison of a layered slab and an atlas head model for Monte Carlo fitting of time-domain NIRS data of the adult head,” Journal of Biomedical Optics, 19(1), pp. 16010, 2014
  29. Gagnon L, Sakadžić S, Lesage F, Musacchia JJ, Lefebvre J, Fang Q, et al., “Quantifying the microvascular origin of BOLD-fMRI from first principles with two-photon microscopy and an oxygen-sensitive nanoprobe,” J Neurosci.35(8):3663-75, 2015
  30. Deng B, Brooks DH, Boas DA, Lundqvist M, and Fang Q, "Characterization of structural-prior guided optical tomography using realistic breast models derived from dual-energy x-ray mammography," Biomed. Opt. Express 6(7), 2366-2379, 2015
  31. Deng B, Fradkin M, Rouet JM, Moore RH, Kopans DB, Boas DA, Lundqvist M, and Fang Q, "Characterizing breast lesions through robust multi-modal data fusion using independent diffuse optical and x-ray breast imaging," Journal of Biomed. Optics Letters, 20(8), 080502, 2015
  32. Yao R, Intes X, Fang Q* (2016), "Generalized mesh-based Monte Carlo for wide-field illumination and detection via mesh retessellation," Biomed. Optics Express, 7(1), 171-184, (online 18 Dec 2015)
  33. Zimmermann B, Fang Q, Boas D, Carp S*, (2016) “Frequency domain near-infrared multiwavelength imager design using high-speed, direct analog-to-digital conversion,” J. Biomed. Opt. 21(1), 016010 (Jan 26, 2016)

Peer-reviewed conference papers

  1. Fang Q, Meaney PM, Paulsen KD, “Phase unwrapping in the presence of scattering nulls and applications to microwave imaging,” Proceeding (425) Antennas, Radar, and Wave Propagation, Jul. 2004
  2. Fang Q, Carp SA, Selb J, Moore RH, Kopans DB, Miller EL, Brooks DH, Boas DA, "Spectrally Constrained Optical Breast Imaging with Co-registered X-Ray Tomosynthesis," OSA Biomedical Optics (BIOMED) conference, 2008.
  3. Fang Q, Carp SA, Selb J, Moore RH, Kopans DB, Miller EL, Brooks DH, Boas DA, "A multi-modality image reconstruction platform for diffuse optical tomography," OSA Biomedical Optics (BIOMED) conference, 2008.
  4. Zhu G, Popovic M, Fang Q, “Microwave-Induced Thermoacoustics: Assisting Microwave Tomography,” 13th Biennial IEEE Conference on Electromagnetic Field Computation, OB2-1, Athens, May 2008
  5. Fang Q and Boas D, “Tetrahedral mesh generation from volumetric binary and gray-scale images”, IEEE International Symposium on Biomedical Imaging (ISBI’09), 1142-1145, 2009.
  6. Fang Q, Carp SA, Moore RH, Kopans DB, Boas DA, “Imaging Benign and Malignant Breast Lesions with Combined Optical Imaging and Tomosynthesis,” OSA Biomedical Optics (BIOMED) conference (invited), Apr. 2010.
  7. Fang Q and Boas D, “GPU accelerated Monte Carlo simulation for 3D photon migration”, OSA Biomedical Optics (BIOMED) conference, Apr. 2010.
  8. Fang Q, Carp SA, Martino M, Moore RH, Kopans DB, and Boas DA, “Joint image reconstruction for breast tumor diagnosis using both structural and functional information,” OSA Biomedical Optics (BIOMED) conference, Apr. 2012.
  9. Fang Q, “Quantitative diffuse optical tomography using a mobile phone camera and automatic 3D photo stitching,” OSA Biomedical Optics (BIOMED) conference, Apr. 2012.
  10. Paravecino F, Yu L, Kaeli D, Fang Q*, “Portable performance for Monte Carlo simulations of photon migration in 3D turbid media for single and multiple GPUs”, GTC2016, Paper#S6635, 2016, CA
  11. Deng B, Brooks, DH, Boas DA, Lundqvist M, Fang Q* “Characterization of Breast Lesions Using Structural Prior Guided Optical Tomography on the Realistic Breast Model – DigiBreast,” OSA BIOMED 2016, Paper#2458069, FL
  12. Yao R, Intes X, Fang Q*, "Enabling wide-field illumination and detection in mesh-based Monte Carlo simulations ," OSA BIOMED 2016, Paper#2459052, FL
  13. Inacio D, Deng B, Kopans D, Boas D, Fang Q*, (2016) “Automatically finding tumors using structural-prior guided optical tomography,” OSA BIOMED 2016, Paper#2468528, FL
  14. Inacio D, Deng B, Kopans D, Boas D, Fang Q*, (2016) “Automatically finding tumors using structural-prior guided optical tomography,” OSA BIOMED 2016, Paper#2468528, FL
  15. Deng B, Fang Q, Boas DA, Carp S*, “Impact of Experimental Parameter Errors on Reconstructed Breast Images Using Diffuse Optical Tomography,” OSA BIOMED 2016, Paper#2455560, FL
  16. Ruoyang Y, Fang Q*, “Efficient Jacobian Construction for Hyperspectral Wide-field Diffuse Optical Tomography via Replay Monte Carlo,” OSA BIOMED 2018, Paper#2912855, FL
  17. Tran A P, Fang Q*, “Generating High Quality Tetrahedral Meshes of the Human Head and Applications in fNIRS,” OSA BIOMED 2018, Paper#2912898, FL
  18. Vanegas M, Carp S, Fang Q*, “Mobile Phone Camera Based Near-Infrared Spectroscopy Measurements,” OSA BIOMED 2018, Paper#2912906, FL
  19. Vanegas M, Zimmerman B, Sahin S, Carp S, Fang Q*, “A Mobile Phone Based Reflectance Pulse Oximeter ,” OSA BIOMED 2018, Paper#2931367, FL
  20. Yu L, Fang Q*, “Fast Monte Carlo Photon Transport Simulations for Heterogeneous Computing Systems,” OSA BIOMED 2018, Paper#2912790, FL
  21. Yuan Y, Fang Q*, “Denoising in Monte Carlo Photon Transport Simulation Using GPU-accelerated Adaptive Non-Local Mean Filter,” OSA BIOMED 2018, Paper#2912729, FL

Magazine article

  1. Fang Q, "Multi-modality breast imaging combining structure and function in breast cancer diagnosis", Diagnostic Imaging Europe, Vol. 27 No. 7, 13-16, 2011.

Book chapters

  1. Meaney PM, Fang Q, “Chapter 7. Microwave imaging: A model-based approach”, Alternative Breast Imaging-Four Model-Based Approaches, Paulsen KD, Meaney PM, Gilman L(Eds.), Kluwer, 2004.
  2. Fang Q, Carp S, Selb J, Boas D, “Chapter 9. Optical Imaging and X-ray Imaging”, Translational multimodality Optical Imaging, Azar FS, Intes X (Eds.), Artech House, Norwood, 2008
  3. Venugopal V, Fang Q and Intes X, “Chapter 2. Multimodal Diffuse Optical Imaging”, in "Biophotonics for medical applications", Woodhead Publishing, 2012
  4. Carp S, Fang Q, “Diffuse optical medical imaging,” in “Pathobiology of Human Disease (PHD),” Elsevier, 2013
  5. Nina-Paravecino F., Yu L, Fang Q, and Kaeli D, “High-performance Monte Carlo Simulations for Photon Migration and Applications in Optical Brain Functional Imaging”, Handbook on Smart Healthcare, Springer (in press)
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